FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498103
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19670.3948982439374989No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17610.35354133582813196No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12850.2579787714589151No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6670.1339080471308143No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6640.1333057620612604No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5710.1146349249050899No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5500.1104189294182127No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5220.10479760210237643No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA5130.10299074689371476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)