FastQCFastQC Report
Wed 31 May 2023
EGAF00007927334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498103
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41710.8373770083697548No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41610.8353693914712419No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13430.2696229494702903No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12960.2601871500472794No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6630.13310500037140913No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6240.1252752944672086No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5670.11383187814568473No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5660.11363111645583343No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5480.1100174060385101No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5220.10479760210237643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)