FastQCFastQC Report
Wed 31 May 2023
EGAF00007927339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536713
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21600.40244972639008186No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18730.3489760821891774No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10410.19395840980188667No Hit
CAGTGGCACCTTACGATCAACCGGCAGACCTACTTCGGCCTGCA9720.18110237687553682No Hit
CAGCGGCACCTTACGGTCAACTGGCAGGCCAACTTCCGCCTGCA8790.16377468032263054No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT7560.14085740423652865No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6900.12856032926349836No Hit
CGGAACTTTACGGTCAACTGGCAGACCTACTTCTGCCTGCAGTG6070.11309582588832394No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5820.10843784294399428No Hit
CTTACGATCAACCGGCAGGCCGACTTCCGCCTGCAGAGCCTCTT5640.10508409522407693No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5630.10489777590630374No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5480.10210298613970595No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5470.10191666682193277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)