FastQCFastQC Report
Wed 31 May 2023
EGAF00007927340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536713
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45420.846262341325811No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13870.25842489375140903No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10350.19284049389524754No Hit
ACCGGCATCGTGAACGGTATGGATGTTTCCG9560.17812126779116585No Hit
ACTGGTATCGTAAACGGCATGGATGTTTCCG8560.15948933601384724No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7620.14197532014316777No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG7560.14085740423652865No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6990.13023720312345705No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6570.12241179177698323No Hit
ATCACTGGCATTGTCAACGGTATGGATGTAT6310.11756748951488039No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5920.11030103612172613No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5880.1095557588506334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)