FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509904
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19210.37673758197621515No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17440.34202516552135304No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10320.2023910383130942No Hit
CAGTGGCACCTTACGATCAACCGGCAGACCTACTTCGGCCTGCA9240.18121058081521227No Hit
CAGCGGCACCTTACGGTCAACTGGCAGGCCAACTTCCGCCTGCA9020.17689604317675484No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT7480.1466942797075528No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6070.1190420157519847No Hit
CGGAACTTTACGGTCAACTGGCAGACCTACTTCTGCCTGCAGTG5910.11590417019674293No Hit
CTTACGATCAACCGGCAGGCCGACTTCCGCCTGCAGAGCCTCTT5590.10962847908625939No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5530.10845178700304371No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5430.1064906335310176No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5120.10041105776773668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)