FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509904
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42420.8319213028334745No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42340.8303523800558537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9930.1947425397721924No Hit
ACCGGCATCGTGAACGGTATGGATGTTTCCG8880.1741504283159183No Hit
ACTGGTATCGTAAACGGCATGGATGTTTCCG8710.1708164674134739No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG7380.1447331262355267No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6660.1306128212369387No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6650.1304167058897361No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6610.12963224450092567No Hit
ATCACTGGCATTGTCAACGGTATGGATGTAT5780.11335467068310898No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5700.11178574790548809No Hit
ACTGGTATCACCGGTATTGTTAACGGCATGG5540.10864790235024632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)