FastQCFastQC Report
Wed 31 May 2023
EGAF00007927343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489276
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13910.28429761525192326No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11180.22850088702491025No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10890.2225737620484144No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10680.21828170603095187No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9840.2011134819611017No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9320.19048553372738494No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8650.17679183119548067No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8020.16391566314309305No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7150.1461342882136054No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6970.14245538305578037No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6800.1389808615178345No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6280.12835291328411774No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5130.10484879699801339No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5120.10464441337813422No Hit
CATGTCGATAACCGCGCGACGAGCTGCGCCGTTGCTCATGTTTA4980.10178304269982588No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4910.10035235736067169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)