FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489276
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41880.8559586000539573No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19280.3940516191270367No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19090.39016833034933246No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11520.235449930100802No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11430.23361047752188951No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11100.22686581806587694No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9950.20336170177977256No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9560.195390740604485No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9400.19212060268641828No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7390.15103949509070544No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7320.14960880975155127No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7080.14470360287445122No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6360.1299879822431511No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5460.11159345645402595No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5310.10852770215583842No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5050.10321372803898003No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4980.10178304269982588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)