FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500509
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42980.8587258171181738No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20880.41717531552879167No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19610.3918011464329313No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11940.23855714882249868No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11770.2351606065025804No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10790.2155805390112865No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9880.19739904776937076No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9420.1882084038448859No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9330.18641023438139973No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7890.157639522965621No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6930.13845904868843517No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6740.13466291315440881No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6410.12806962512162617No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5860.11708081173365514No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5550.11088711691498054No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC5380.10749057459506224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)