FastQCFastQC Report
Sun 21 May 2023
EGAF00007927348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543172
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA20290.37354650092420083No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14940.27505099673768163No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13830.25461548091580566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11420.21024647809533628No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA11130.2049074694571885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10160.18704940608131493No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8670.159617947906004No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.11543304883167763No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6050.11138276641653104No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5620.10346630533238091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)