FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552383
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11640.2107233568013498No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG11420.2067406129442796No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10430.18881826558746378No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9270.1678183434320028No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7690.13921500118577146No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6800.12310299194580572No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6540.11839611284199551No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6510.11785301140694046No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5910.10699098270583995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)