FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552383
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21340.3863261541358079No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15870.28730065914410835No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15230.2757144951962678No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11800.21361989778830992No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA11480.20782681581438966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10140.1835682850485985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8840.16003388952954742No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6740.12201678907569567No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5980.10825821938763502No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5540.10029273167349467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)