FastQCFastQC Report
Wed 31 May 2023
EGAF00007927357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530572
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20330.3831713697669685No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17890.3371832663615871No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17180.32380148217395566No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14950.28177137127477514No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14710.2772479512676884No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13470.25387694789774057No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13440.25331152039685473No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11220.21146988533130281No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11070.20864274782687364No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10830.20411932781978695No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9870.18602564779144018No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9820.18508326862329713No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9560.1801828969489532No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8850.16680111276132173No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7800.14701115023031747No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7770.14644572272943163No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7450.14041449605331605No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7310.13777583438251548No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6970.13136765603914266No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6620.12477100186214123No Hit
ACGACGGGAGGAGCGAGAGTTCACAGACGGACGACGACCTGGGC6390.12043605768868315No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6340.11949367852054009No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6280.11836282351876841No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6080.11459330684619617No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5960.11233159684265284No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5940.11195464517539562No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5420.10215390182670779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)