FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505180
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43830.8676115444000158No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42240.8361376143156894No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28840.570885624925769No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19420.38441743536957124No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16520.32701215408369294No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14000.2771289441387228No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13420.26564788788154714No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12200.24149807989231561No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11620.23001702363513996No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11440.22645393721049922No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10210.20210617997545427No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9550.18904152975177166No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9450.1870620372936379No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9350.18508254483550418No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8580.16984045290787442No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8130.1609327368462726No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7210.14272140623144225No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7050.13955421829842826No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6160.12193673542103806No Hit
GCCTTCGAAGCGGTTCTGCCGATGCTGGAAG6100.12074903994615781No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5970.11817569975058397No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5860.11599825804663685No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5600.11085157765548914No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5590.11065362840967576No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5420.10728849123084841No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5340.10570489726434143No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5170.10233976008551407No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5160.1021418108397007No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5070.10036026762738033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)