FastQCFastQC Report
Wed 31 May 2023
EGAF00007927361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498773
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16690.33462116032744355No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16340.3276039400689291No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15810.3169778636774645No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15140.3035448991825941No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13870.27808241424455615No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13170.26404797372752736No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12050.2415928689002813No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12010.2407909008707368No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11730.23517712466392526No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11660.2337736806122224No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA11570.23196925254574727No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9730.19507872318670016No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9570.19187085106852217No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7500.15036900553959415No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7230.1449557213401688No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7180.14395326130323816No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6920.1387404691111989No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6850.137337025059496No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6740.1351316129782486No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC6200.12430504457939784No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5530.11087208008452742No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5480.1098696200475968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)