FastQCFastQC Report
Wed 31 May 2023
EGAF00007927363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507000
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16970.3347140039447732No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16110.3177514792899408No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15530.30631163708086784No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14330.28264299802761345No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14130.278698224852071No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13890.2739644970414201No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13840.2729783037475345No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12590.24832347140039449No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12060.23786982248520708No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA11360.2240631163708087No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11290.22268244575936882No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9650.1903353057199211No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9400.1854043392504931No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7750.15285996055226825No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7740.15266272189349112No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7590.14970414201183432No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7110.14023668639053255No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC7080.13964497041420118No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6970.13747534516765286No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5950.11735700197238659No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5940.11715976331360947No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5790.11420118343195268No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5250.10355029585798817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)