FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507000
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34220.6749506903353057No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32350.6380670611439843No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18490.3646942800788954No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18170.35838264299802763No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17500.34516765285996054No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16610.32761341222879686No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15870.31301775147928995No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14570.2873767258382643No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13410.2644970414201183No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12580.24812623274161738No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG11660.22998027613412228No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11210.2211045364891519No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10680.2106508875739645No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG8120.1601577909270217No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8000.15779092702169625No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7900.15581854043392507No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7610.15009861932938856No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7350.14497041420118345No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6540.1289940828402367No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6070.11972386587771203No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5800.11439842209072978No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5730.11301775147928995No Hit

[OK]Adapter Content

Adapter graph