FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477956
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17160.359028864581677No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15400.32220539129124853No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15360.3213684941710116No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13480.2820343295198721No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13470.28182510523981286No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12850.2688531998761392No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12030.25169680891128055No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12000.25106913607110276No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11350.2374695578672514No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA11120.2326573994258886No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11010.2303559323452368No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9430.19729849609587494No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9160.19164944053427513No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7810.16340416272627606No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7260.15189682732301718No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7050.14750311744177289No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6950.14541087464118035No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6920.1447832018010026No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6780.14185406188017308No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5910.12365154951501811No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5590.11695637255312204No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5550.11611947543288505No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4810.10063687870850035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)