FastQCFastQC Report
Wed 31 May 2023
EGAF00007927366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477956
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39760.8318757375155873No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32120.6720283875503185No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30700.6423185397819047No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18440.3858095724292613No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16500.34522006209776634No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16480.3448016135376478No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15170.31739323284988574No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14520.30379365464603436No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12660.26487793855501346No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11790.24667542618985847No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG11550.24165404346843644No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11460.23977102494790314No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10750.22491610106369622No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8210.17177313392864615No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7680.1606842470855058No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7480.15649976148432074No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7320.1531521730033727No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6260.13097439931709196No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6250.1307651750370327No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.1163286997129443No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5360.11214421411175925No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5100.10670438283021867No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4950.1035660186293299No Hit

[OK]Adapter Content

Adapter graph