FastQCFastQC Report
Wed 31 May 2023
EGAF00007927368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540592
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34800.6437387160742297No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22930.4241646195282209No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15740.2911622813508154No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14380.266004676354811No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11530.21328469529700772No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11090.20514547015124163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10920.20200076952674104No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10770.1992260336815935No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10750.1988560689022405No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10170.18812709030100336No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9760.18054281232426672No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9170.16962885133335306No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8470.15668008405599787No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6250.11561399354781425No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5740.10617989167431262No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5530.10229526149110604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)