FastQCFastQC Report
Sun 21 May 2023
EGAF00007927370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514775
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44920.8726142489437132No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35060.6810742557428003No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20960.4071681802729348No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14110.27410033509785825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11070.2150454081880433No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10320.20047593608858238No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9800.19037443543295615No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9760.1895973969209849No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9640.18726628138507115No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9620.18687776212908552No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8390.1629838278859696No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8320.1616240104900199No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7700.14957991355446554No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5740.11150502646787432No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5360.10412316060414745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)