FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527432
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21260.40308513704136273No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19550.3706638960093434No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14430.27358977081405755No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13400.2540611870345372No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11860.22486311031564257No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10860.20590332023843833No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9420.17860122252726418No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8860.16798374008402978No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8840.1676045442824857No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8580.1626749988624126No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8520.16153741145778033No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8450.16021022615237604No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7930.15035113531222982No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7170.1359416948535546No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6780.12854737672344493No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6630.1257034082118643No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6560.12437622290645999No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6360.12058426489101913No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6340.12020506908947504No Hit
GGAACACACGTGCAGGCCATAAGAGCACAGGTCTTTGTTGTCAT5920.11224195725704925No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5840.1107251740508729No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5380.10200367061535894No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5320.1008660832107267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)