FastQCFastQC Report
Wed 31 May 2023
EGAF00007927372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527432
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47270.8962292769494457No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19150.36307997997846164No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14410.27321057501251345No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14010.2656266589816318No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12720.24116852978203826No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11710.22201914180406193No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9940.1884603133674104No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9570.18144519103884482No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9220.17480926451182333No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9180.17405087290873514No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8670.16438137996936097No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8500.16115821565623625No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC8060.15281590802226638No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7680.14561118779292875No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6560.12437622290645999No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6530.12380742920414387No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6440.12210104809719548No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6380.12096346069256321No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6330.120015471188703No Hit
GAAGACGGTGATATCATCCTGTACAAAAGCG6100.11565471947094601No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5690.10788120553929226No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5680.10769160763852022No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5530.10484763912693958No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5500.10427884542462346No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5430.10295166011921916No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5290.10029728950841056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)