FastQCFastQC Report
Wed 31 May 2023
EGAF00007927375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537151
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16590.3088517009183637No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15040.27999575538349547No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10590.19715126658984158No Hit
AGCCGGGGACGGGTAAGAGGTGGTAACCGGGGACGGATAGCTGG7080.13180651250765613No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6590.12268431037082683No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6470.12045030168425638No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6150.1144929451867352No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5610.1044399060971682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)