FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548810
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14940.27222536032506695No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14000.2550973925402234No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13010.23705836263916472No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG11310.2060822506878519No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG11040.20116251526029047No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8570.15615604671926533No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7290.13283285654415916No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6560.11953134964741896No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6500.11843807510796085No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5830.10622984275067875No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5520.10058125763014523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)