FastQCFastQC Report
Wed 31 May 2023
EGAF00007927378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548810
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29220.5324247007160948No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15270.2782383702920865No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14740.2685811118602066No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13650.2487199577267178No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11290.2057178258413659No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA11190.2038957016089357No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC10920.19897596618137425No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7320.13337949381388822No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6780.12354002295876533No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6530.1189847123776899No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6130.11169621544796925No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5800.1056832054809497No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5550.10112789489987427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)