FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520950
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14180.2721950283136577No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13020.24992801612438814No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12010.23054035895959304No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG10890.20904117477684997No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG10200.1957961416642672No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8060.15471734331509743No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6890.13225837412419617No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5860.11248680295613783No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5560.10672809290718879No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5480.10519243689413571No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5470.10500047989250406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)