FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492328
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43510.8837604198826797No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13930.2829414536650363No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9960.20230415495360818No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9270.18828910807429194No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9140.18564859199558018No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8800.17874262686664177No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5510.11191725841309046No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5330.10826115922718188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)