FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526493
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15160.287943049575208No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10000.18993604853245913No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7600.14435139688466894No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5940.11282201282828072No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5920.11244214073121579No Hit

[OK]Adapter Content

Adapter graph