FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526493
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15190.2885128577208054No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14770.2805355436824421No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11050.20987933362836736No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10700.20323157192973124No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10270.1950643218428355No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8930.169612891339486No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6400.12155907106077384No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6330.12022951872104662No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5570.10579437903257972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)