FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449954
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23320.5182752014650387No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14750.32781128737604287No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12630.2806953599701303No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9620.21379963285135814No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6480.14401472150486494No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6340.14090329233654997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6300.14001431257417424No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6190.13756961822764105No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5210.11578961404943616No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5080.11290042982171511No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4770.10601083666330335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)