FastQCFastQC Report
Sun 21 May 2023
EGAF00007927387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451854
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7430.16443364449578848No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6870.15204026079220279No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6620.1465075002102449No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6330.14008949793517375No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5830.129023976771258No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5290.11707321391422894No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5220.11552404095128072No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4810.1064503135968698No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4620.10224541555458179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)