FastQCFastQC Report
Wed 31 May 2023
EGAF00007927388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451854
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23140.5121123194660222No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14380.3182443886742178No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13330.29500679422999465No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10010.22153173370159387No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6800.15049108782925458No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6530.14451570640074005No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6160.1363272207394424No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6070.13433542692993755No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5110.11308962629521925No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5030.11131914290899274No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4650.10290934682441674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)