FastQCFastQC Report
Wed 31 May 2023
EGAF00007927393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436087
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14220.3260817222251523No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9130.20936189338365968No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8670.19881353950014563No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8340.19124624214892902No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7550.1731305909141983No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6940.15914255641649488No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6150.1410269051817642No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5570.12772680680689863No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5460.12520437435649306No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5250.12038882149662798No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5150.11809570108716838No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4910.1125922121044654No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC4840.11098702781784368No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4830.11075771577689773No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4820.11052840373595176No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4420.10135592209811345No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4380.10043867393432962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)