FastQCFastQC Report
Sun 21 May 2023
EGAF00007927394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436087
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46441.064925118153029No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19610.44968091229502366No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14300.32791621855272No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10420.23894314666568828No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10040.23022928910974186No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.19606179500879412No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7280.16693916580865745No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7100.1628115490716302No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6150.1410269051817642No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5640.12933199109352034No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5630.12910267905257436No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5560.12749749476595268No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5380.12336987802892543No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5320.12199400578324968No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5300.12153538170135776No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5020.11511464455487093No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4880.11190427598162753No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4790.1098404676131139No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4440.10181454618000538No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4400.10089729801622153No Hit

[OK]Adapter Content

Adapter graph