FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463684
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15390.3319070746456639No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10410.22450634483829504No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9600.20703755143589167No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8970.1934507121229113No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8500.18331449866719576No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7390.1593757817824208No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6830.14729859128199377No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5620.12120323323642826No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5560.11990924853995392No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5500.11861526384347962No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5480.1181839356113215No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5220.1125766685932661No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5100.10998869920031745No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5090.10977303508423841No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5090.10977303508423841No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4880.10524408864657828No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4850.10459709629834112No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4700.1013621345571553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)