FastQCFastQC Report
Wed 31 May 2023
EGAF00007927406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442573
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42940.9702354187896686No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23390.5285003829876653No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22180.5011602605671832No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21820.49302600926852747No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC18560.4193658447306998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18420.41620252478122255No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15250.34457592306805884No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14550.32875932332067254No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14100.31859150919735274No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10550.2383787533356079No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10410.23521543338613066No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9690.218946930788819No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9640.21781717366400571No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC9470.2139759994396405No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9260.20923101951542455No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8500.19205871121826232No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8310.18776563414397174No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8030.1814389942450172No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7950.1796313828453159No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7190.16245907454815361No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7160.16178122027326566No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7130.16110336599837766No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7130.16110336599837766No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7130.16110336599837766No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6740.15229126042483387No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6680.1509355518750579No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6150.13896012635203683No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5800.13105182647834368No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5360.12110996377998659No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5240.11839854668043465No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4870.11003834395681618No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC4840.10936048968192819No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4700.10619716973245093No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4660.10529336403260027No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4580.10348575263289898No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4560.10303384978297367No Hit
CCGGCTGCCTCCCCGCCGCGTACCCCTGCCT4560.10303384978297367No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4540.10258194693304834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)