FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439716
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50011.1373250006822586No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13360.303832473687562No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11450.2603953460870198No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5370.12212428021723112No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5150.11712105086010062No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4940.11234524101920329No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4900.11143556295427048No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4780.10870652875947202No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4700.10688717262960637No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4660.10597749456467356No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4620.10506781649974074No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4530.1030210408536419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)