FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462541
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23070.4987665958260997No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13760.2974871416804132No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12390.26786814574275575No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5670.12258372771278654No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5640.12193513656086703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5320.1150168309403923No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5190.11220626928207446No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5170.11177387518079478No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5150.11134148107951511No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5040.10896331352247693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)