FastQCFastQC Report
Sun 21 May 2023
EGAF00007927420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483964
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51981.074046829929499No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG25660.5302047259713533No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24480.505822747146482No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG21270.43949549966526436No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18610.3845327338397071No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9670.19980825020042814No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8680.17935218322023952No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6510.13451413741517965No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC6470.13368762965840433No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6260.12934846393533403No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5970.12335628269871313No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5930.12252977494193783No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5680.11736410146209224No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5570.11509120513096016No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5150.10641287368481953No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4920.10166045408336156No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4860.10042069244819862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)