FastQCFastQC Report
Sun 21 May 2023
EGAF00007927421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489074
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG26000.5316168923312219No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22540.460870952044067No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21300.4355169156405779No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20140.41179862352118496No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16890.3453465119797822No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9590.19608484605601606No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7980.1631654923385827No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6410.1310640107631974No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6330.12942826647910133No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6070.1241120975557891No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6050.12370316148476508No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6030.12329422541374106No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG5960.12186294916515701No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5720.11695571631286882No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5310.10857252685687648No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG4990.1020295497204922No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4970.10162061364946819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)