FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489074
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55171.1280501519197506No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG26610.5440894424974543No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25160.5144415773482132No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG21420.43797053206672204No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18240.3729496967739033No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10040.20528590765405644No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8760.17911399910851938No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6750.1380159239706057No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6410.1310640107631974No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6340.12963273451461332No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC6210.12697465005295722No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6150.12574784183988516No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5890.12043167291657295No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5250.10734571864380442No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5220.10673231453726839No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5200.10632337846624437No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5050.10325635793356425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)