FastQCFastQC Report
Wed 31 May 2023
EGAF00007927424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491405
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26380.5368280746024156No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13210.26882103356701703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6810.13858222850805343No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6690.13614025091319787No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6190.12596534426796635No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5840.11884290961630428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)