FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459996
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53071.1537056843972555No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21310.46326489795563436No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11520.25043696032139406No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11380.24739345559526604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10130.220219306254837No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8920.19391472969330167No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7710.16761015313176636No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7420.16130575048478682No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7380.1604361777058931No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7310.15891442534282907No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6640.1443490812963591No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5690.12369672779763302No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5510.11978365029261123No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4950.10760963138809904No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4650.10108783554639605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)