FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486790
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25160.5168553174880339No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22540.46303334086567105No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12580.25842765874401696No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11830.24302060436738634No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10590.21754760779802376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9040.18570636208632058No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8160.1676287516177407No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8100.16639618726761027No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7980.16393105856734938No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7790.16002793812526964No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6660.13681464286447953No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5900.12120216109616057No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5680.1166827584790156No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5230.10743852585303725No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5170.1062059615029068No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA4910.10086484931900819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)