FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466776
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49021.0501825286647128No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20880.4473237698596329No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12270.26286698544912335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10760.23051742163264607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9560.20480915899703497No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8490.1818859581469484No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8230.17631583457589936No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8090.1733165372684114No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7980.1709599465268137No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7410.15874852177489845No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7200.1542495758136665No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6010.12875554870001885No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.1248993093046772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)