FastQCFastQC Report
Sun 21 May 2023
EGAF00007927433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434665
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13580.3124245108301796No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10850.24961752153957645No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9460.21763887131469062No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9400.21625849792368834No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG9140.21027687989601188No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8900.2047553863320028No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8710.20038420392716227No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7980.1835896610033014No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7670.17645773181645635No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7500.17254667387528327No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7360.1693258026296113No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7260.1670251803112742No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6970.16035337558809656No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6720.15460181979225382No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6600.15184107301024927No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6530.1502306373874133No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6410.14746989060540877No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5800.13343609446355237No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5690.13090540991338157No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5690.13090540991338157No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5400.12423360519020395No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5280.12147285840819941No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5200.11963236055352973No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5020.11549124038052294No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4800.1104298712801813No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4700.10812924896184417No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4700.10812924896184417No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4690.10789918673001046No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4680.10766912449817675No Hit
TTTGTCCGGTTTCGGTGCCGGGGCCGGCGCTGGGGTGGAAGCAG4540.1044482532525048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)