FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434665
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21840.5024559143248248No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18610.42814581344253627No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14010.32231718679902915No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13700.3151852576121841No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11030.2537586417125833No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA10210.23489353870221893No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10110.23259291638388185No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9870.22707142281987278No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9330.21464806230085237No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8180.18819090563997562No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8140.18727065671264076No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7930.18243934984413285No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7570.17415710949811924No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7520.1730067983389507No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7480.17208654941161583No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7340.1688656781659439No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6830.15713250434242462No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6650.15299138416941782No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6380.14677970390990763No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6350.1460895172144065No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6340.14585945498257277No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5910.1359667790137232No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5460.1256139785812062No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5400.12423360519020395No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5350.12308329403103539No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5310.12216304510370055No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5220.12009248501719716No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5100.11733173823519263No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5070.1166415515396915No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4970.11434092922135437No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4900.1127304935985184No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4890.11250043136668468No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4640.10674887557084191No Hit
ACCTTCGTTAGCGTAGACCAGAACTGGATCA4580.10536850217983963No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4510.10375806655700368No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4490.10329794209333625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)