FastQCFastQC Report
Fri 2 Jun 2023
EGAF00007927435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415275
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13560.326530612244898No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10470.25212208777316236No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9160.22057672626572752No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8400.202275600505689No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG8380.20179399193305642No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8020.19312503762566974No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7990.19240262476672085No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7730.18614171332249713No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7530.1813256275961712No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7290.1755463247245801No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7170.17265667328878453No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6940.16711817470350973No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6700.1613388718319186No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6600.15893082896875566No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6580.15844922039612305No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5920.14255613749924748No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5860.14111131178134972No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5560.13388718319186083No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5340.12858948889290228No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5270.12690385888868824No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5190.12497742459815786No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5180.12473662031184155No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4890.11775329600866896No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4750.11438203600024081No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4610.11101077599181267No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4520.10884353741496598No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4430.10667629883811933No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4410.10619469026548674No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4220.10161940882547708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)