FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415275
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47211.1368370356992354No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18250.439467822527241No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13700.3299018722533261No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13660.3289386551080609No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10240.24658358918788753No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA9470.22804165914153274No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9110.21937270483414606No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8890.21407501053518752No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8700.20949972909517792No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8270.19914514478357714No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7610.1832520618867016No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7480.18012160616458975No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7300.1757871290108964No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7270.1750647161519475No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7240.17434230329299863No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6750.16254289326350008No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6700.1613388718319186No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6480.1560411775329601No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6070.14616820179399193No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6060.14592739750767564No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5720.13774005177292156No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5580.1343687917644934No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5510.13268316176027933No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5360.12907109746553488No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4910.11823490458130155No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4860.11703088314972006No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4840.11654927457708747No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4820.11606766600445488No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4770.1148636445728734No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4760.1146228402865571No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4690.11293721028234303No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4430.10667629883811933No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4330.10426825597495636No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4320.10402745168864005No Hit
ACCTTCGTTAGCGTAGACCAGAACTGGATCA4240.10210101739810969No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4160.1001745831075793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)